AtomDB
0.0.1
Introduction
About
License
Citing AtomDB
Code of Conduct
User Documentation
Installation
Setup
Tutorials
Getting Started
Requirements
Script usage
Atom-DB as a Python library
Loading/Dumping Data
Getting Atomic Properties
Promolecule properties
Building a promolecule
Extensive (global) properties
Extensive (local) properties: density properties
Visualizing density properties
Intensive properties
Promolecule with floating point charges and/or multiplicities
Non Covalent Interactions from Promolecular Densities
Packages install for Google Colab
API Reference
atomdb
atomdb package
Subpackages
atomdb.datasets package
Submodules
atomdb.periodic module
atomdb.promolecule module
atomdb.species module
atomdb.utils module
atomdb.version module
Module contents
AtomDB
Index
Index
A
|
C
|
D
|
E
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
V
A
AMU (in module atomdb.utils)
ANGSTROM (in module atomdb.utils)
at_radius (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
(atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
atmass (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
atnum (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
(atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
atomdb
module
atomdb.datasets
module
atomdb.datasets.gaussian
module
atomdb.datasets.hci_augccpwcvqz
module
atomdb.datasets.nist
module
atomdb.datasets.nist.run
module
atomdb.datasets.numeric
module
atomdb.datasets.numeric.run
module
atomdb.datasets.slater
module
atomdb.datasets.uhf_augccpvdz
module
atomdb.periodic
module
atomdb.promolecule
module
atomdb.species
module
atomdb.utils
module
atomdb.version
module
atoms (atomdb.promolecule.Promolecule attribute)
C
c6 (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
charge (atomdb.species.Species property)
charge() (atomdb.promolecule.Promolecule method)
CMINV (in module atomdb.utils)
coeffs (atomdb.promolecule.Promolecule attribute)
compile() (in module atomdb.species)
coords (atomdb.promolecule.Promolecule attribute)
cov_radius (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
(atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
D
d_dens_func() (atomdb.species.Species method)
d_dens_tot (atomdb.species.SpeciesData attribute)
datafile() (in module atomdb.species)
dataset (atomdb.species.Species property)
dd_dens_func() (atomdb.species.Species method)
dd_dens_tot (atomdb.species.SpeciesData attribute)
default() (atomdb.species.JSONEncoder method)
DEFAULT_DATAPATH (in module atomdb.utils)
DEFAULT_DATASET (in module atomdb.utils)
default_matrix() (in module atomdb.species)
DEFAULT_REMOTE (in module atomdb.utils)
default_required() (in module atomdb.species)
default_vector() (in module atomdb.species)
dens_func() (atomdb.species.Species method)
dens_tot (atomdb.species.SpeciesData attribute)
density() (atomdb.promolecule.Promolecule method)
,
[1]
DensitySpline (class in atomdb.species)
dispersion (atomdb.species.SpeciesData attribute)
dispersion_c6 (atomdb.species.Species property)
dump() (in module atomdb.species)
E
elem (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
Element (class in atomdb.periodic)
element_name() (in module atomdb.periodic)
element_number() (in module atomdb.periodic)
element_symbol() (in module atomdb.periodic)
encode() (atomdb.species.JSONEncoder method)
eneg (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
energy (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
energy() (atomdb.promolecule.Promolecule method)
,
[1]
eta (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
eta() (atomdb.promolecule.Promolecule method)
,
[1]
EV (in module atomdb.utils)
G
generate_mult_csv() (in module atomdb.utils)
get_data() (in module atomdb.periodic)
get_docstring() (atomdb.species.Species method)
get_info() (in module atomdb.periodic)
gradient() (atomdb.promolecule.Promolecule method)
group (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
H
HDF5_NIST_FILE (in module atomdb.utils)
hessian() (atomdb.promolecule.Promolecule method)
I
indent_lines() (in module atomdb.periodic)
ip (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
ip() (atomdb.promolecule.Promolecule method)
,
[1]
item_separator (atomdb.species.JSONEncoder attribute)
iterencode() (atomdb.species.JSONEncoder method)
J
JSONEncoder (class in atomdb.species)
K
ked() (atomdb.promolecule.Promolecule method)
,
[1]
ked_func() (atomdb.species.Species method)
ked_tot (atomdb.species.SpeciesData attribute)
key_separator (atomdb.species.JSONEncoder attribute)
L
laplacian() (atomdb.promolecule.Promolecule method)
load() (in module atomdb.species)
load_nist_spectra_data() (in module atomdb.datasets.nist.run)
load_numerical_hf_data() (in module atomdb.datasets.numeric.run)
M
make_mult_dict() (in module atomdb.utils)
make_promolecule() (in module atomdb.promolecule)
make_property() (in module atomdb.periodic)
mass (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
mass() (atomdb.promolecule.Promolecule method)
,
[1]
mo_d_dens_a (atomdb.species.SpeciesData attribute)
mo_d_dens_b (atomdb.species.SpeciesData attribute)
mo_dd_dens_a (atomdb.species.SpeciesData attribute)
mo_dd_dens_b (atomdb.species.SpeciesData attribute)
mo_dens_a (atomdb.species.SpeciesData attribute)
mo_dens_b (atomdb.species.SpeciesData attribute)
mo_energy_a (atomdb.species.SpeciesData attribute)
mo_energy_b (atomdb.species.SpeciesData attribute)
mo_ked_a (atomdb.species.SpeciesData attribute)
mo_ked_b (atomdb.species.SpeciesData attribute)
mo_occs_a (atomdb.species.SpeciesData attribute)
mo_occs_b (atomdb.species.SpeciesData attribute)
module
atomdb
atomdb.datasets
atomdb.datasets.gaussian
atomdb.datasets.hci_augccpwcvqz
atomdb.datasets.nist
atomdb.datasets.nist.run
atomdb.datasets.numeric
atomdb.datasets.numeric.run
atomdb.datasets.slater
atomdb.datasets.uhf_augccpvdz
atomdb.periodic
atomdb.promolecule
atomdb.species
atomdb.utils
atomdb.version
MODULE_DATAPATH (in module atomdb.utils)
mu (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
mu() (atomdb.promolecule.Promolecule method)
,
[1]
mult (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
(atomdb.species.Species property)
mult() (atomdb.promolecule.Promolecule method)
MULT_TABLE_CSV (in module atomdb.utils)
MULTIPLICITIES (in module atomdb.utils)
N
name (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
nelec (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
nelec() (atomdb.promolecule.Promolecule method)
NEWLINE (in module atomdb.utils)
nexc (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
nspin (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
nspin() (atomdb.promolecule.Promolecule method)
O
obasis_name (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
P
period (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
polarizability (atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
pold (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
Promolecule (class in atomdb.promolecule)
R
raw_datafile() (in module atomdb.species)
read_csv() (in module atomdb.periodic)
rs (atomdb.species.SpeciesData attribute)
run() (in module atomdb.datasets.nist.run)
(in module atomdb.datasets.numeric.run)
S
scalar() (in module atomdb.species)
setup_element() (in module atomdb.periodic)
Species (class in atomdb.species)
SpeciesData (class in atomdb.species)
spinpol (atomdb.species.Species property)
spline() (in module atomdb.species)
symbol (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
T
to_dict() (atomdb.species.Species method)
to_json() (atomdb.species.Species method)
V
vdw_radius (atomdb.periodic.Element attribute)
(atomdb.periodic.Element property)
(atomdb.species.Species property)
(atomdb.species.SpeciesData attribute)
version (in module atomdb.version)